présentations: crée les slides
- Crée les slides pour la présentation. - Structure le dossier des sources pour faciliter l'identification des documents et des slides. - Utilise le projet de modèle BUNIGE pour Reveal.js. - Complète le Makefile pour générer le HTML de la présentation. - Complète la documentation. Co-Authored-by: iGor milhit <igor@milhit.ch>main v0.2.0
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@ -1,3 +1,4 @@
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smpr-1er-partie.html
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*.pdf
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*.pdf
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document.html
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*.html
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!static/template.html
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*.zip
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@ -0,0 +1,4 @@
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[submodule "présentations"]
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path = présentations
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url = gitlab-unige:Igor.Milhit/revealjs-bunige.git
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branch = bunige
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75
Makefile
75
Makefile
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@ -1,16 +1,24 @@
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SOURCE_FOLDER := sources
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SOURCE_FOLDER := sources
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DOCUMENTS_FOLDER := $(SOURCE_FOLDER)/documents
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SLIDES_FOLDER := $(SOURCE_FOLDER)/slides
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OUTPUT_FILENAME := document
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OUTPUT_FILENAME := document
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SLIDES_OUTPUT_FOLDER := présentations
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TEMPLATE_REPOSITORY := https://git.milhit.ch/igor/bunige-pagedjs-template/releases/download
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TEMPLATE_REPOSITORY := https://git.milhit.ch/igor/bunige-pagedjs-template/releases/download
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# Liste les fichiers sources.
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# Liste les fichiers sources.
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MD_UNSORTED := $(wildcard $(SOURCE_FOLDER)/*.md)
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MD_UNSORTED := $(wildcard $(DOCUMENTS_FOLDER)/*.md)
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# Ordonne les fichiers sources sur la base du début numérique du nom des
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# Ordonne les fichiers sources sur la base du début numérique du nom des
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# fichiers.
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# fichiers.
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MD_SORTED := $(shell printf '%s\n' $(MD_UNSORTED) | sort -t- -k1,1n)
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MD_SORTED := $(shell printf '%s\n' $(MD_UNSORTED) | sort -t- -k1,1n)
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# Sources pour les slides
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SLIDES_SOURCES := $(wildcard $(SLIDES_FOLDER)/*.md)
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SLIDES_TARGETS := $(patsubst $(SLIDES_FOLDER)/%.md,$(SLIDES_OUTPUT_FOLDER)/%.html,$(SLIDES_SOURCES))
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SLIDES_BASENAMES := $(basename $(notdir $(SLIDES_SOURCES)))
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.PHONY: all
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.PHONY: all
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all: pdf
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all: pdf slides
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# Construit le fichier HTML.
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# Construit le fichier HTML.
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.PHONY: html
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.PHONY: html
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@ -32,6 +40,43 @@ pdf: $(MD_SORTED)
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--toc --toc-depth=2 \
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--toc --toc-depth=2 \
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--out=$(OUTPUT_FILENAME).pdf $(MD_SORTED)
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--out=$(OUTPUT_FILENAME).pdf $(MD_SORTED)
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# Construit les slides
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$(SLIDES_OUTPUT_FOLDER)/%.html: $(SLIDES_FOLDER)/%.md
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@mkdir -p $(SLIDES_OUTPUT_FOLDER)
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pandoc --to=revealjs --standalone --embed-resources \
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--template=présentations/revealjs-template.html \
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--css=dist/theme/bunige.css \
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--slide-level=2 \
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--output=$@ $<
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.PHONY: slides
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slides: $(SLIDES_TARGETS)
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# Génération d'une présentation spécifique
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.PHONY: slide-%
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slide-%: $(SLIDES_OUTPUT_FOLDER)/%.html
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@echo "Présentation $* générée dans $(SLIDES_OUTPUT_FOLDER)/"
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# Watch amélioré pour les slides
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.PHONY: watch_slides
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watch_slides:
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watchexec -r -w $(SLIDES_FOLDER) -f "*.md" \
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-i "$(SLIDES_OUTPUT_FOLDER)/*.html" \
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-- make slides
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# Template pour générer les cibles de watch spécifiques
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define WATCH_SLIDE_TEMPLATE
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.PHONY: watch-slide-$(1)
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watch-slide-$(1):
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@echo "Surveillance de $(1).md..."
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watchexec -r -w $(SLIDES_FOLDER)/$(1).md \
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-i "$(SLIDES_OUTPUT_FOLDER)/$(1).html" \
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-- make slide-$(1)
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endef
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# Génération automatique des cibles de watch
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$(foreach slide,$(SLIDES_BASENAMES),$(eval $(call WATCH_SLIDE_TEMPLATE,$(slide))))
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# Reconstruit le fichier HTML à la modification des autres fichiers.
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# Reconstruit le fichier HTML à la modification des autres fichiers.
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.PHONY: watch
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.PHONY: watch
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watch:
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watch:
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@ -55,3 +100,29 @@ update:
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curl -o modèle.zip $(TEMPLATE_REPOSITORY)/$(VERSION)/$(VERSION).zip
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curl -o modèle.zip $(TEMPLATE_REPOSITORY)/$(VERSION)/$(VERSION).zip
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unzip -f -o modèle.zip
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unzip -f -o modèle.zip
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rm modèle.zip
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rm modèle.zip
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# Aide
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.PHONY: help
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help:
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@echo "Cibles disponibles :"
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@echo " all - Génère le PDF et toutes les présentations."
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@echo " pdf - Génère le document PDF."
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@echo " html - Génère le document HTML."
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@echo " slides - Génère toutes les présentations."
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@echo " slide-<filename> - Génère une présentation spécifique."
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@echo " watch - Surveille les changements du document."
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@echo " watch-slides - Surveille tous les fichiers slides."
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@echo " watch-slide-<filename> - Surveille une présentation spécifique."
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@echo " debug - Vérifie la contenu de certaines variables."
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@echo " clean - Supprime les fichiers générés."
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@echo ""
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@echo "Documents détectés : $(notdir $(MD_SORTED))"
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@echo "Présentations détectées : $(SLIDES_BASENAMES)"
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.PHONY: debug
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debug:
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@echo "MD_UNSORTED: $(MD_UNSORTED)"
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@echo "MD_SORTED: $(MD_SORTED)"
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@echo "SLIDES_SOURCES: $(SLIDES_SOURCES)"
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@echo "SLIDES_BASENAMES: $(SLIDES_BASENAMES)"
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27
README.md
27
README.md
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# [strats-smpr][1]
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# [strats-smpr][1]
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Support pour un cours donné aux internes du SMPR, en vue de la mise à jour de
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Supports pour un cours donné aux internes du SMPR, en vue de la mise à jour de
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stratégies et d'articles scientifiques, sur la méthodologie de la recherche de
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stratégies et d'articles scientifiques, sur la méthodologie de la recherche de
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littérature et l'utilisation de Zotero.
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littérature et l'utilisation de Zotero.
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Il s'agit ici d'une introduction rapide.
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Il s'agit :
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- Un document pour une introduction rapide (quickstart).
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- Des slides pour la présentation elle-même.
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## Édition
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## Édition
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Pour éditer le document, il faut modifier le fichier [smpr-1re-partie.md][2].
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Pour éditer les sources, il faut modifier les fichiers Markdown du [dossier
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Il est au format Markdown et utilise les possibilités de pandoc-markdown, comme
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`sources/`][2]. L'un correspond au document d'introduction, l'autre à la
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expliqué dans la documentation du modèle.
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présentation.
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## Génération du PDF
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## Génération
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### Requis
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### Requis
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@ -20,12 +23,20 @@ expliqué dans la documentation du modèle.
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- `pagedjs-cli` ([installation][4]).
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- `pagedjs-cli` ([installation][4]).
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- GNU make.
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- GNU make.
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### Commande
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### Commandes
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Pour générer la version PDF du document :
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```
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```
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make pdf
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make pdf
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```
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```
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Pour générer les slides au format HTML :
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```bash
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make slides
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```
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## Développement
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## Développement
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Une fois les requis de la génération de PDF installés, les commandes suivantes
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Une fois les requis de la génération de PDF installés, les commandes suivantes
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@ -41,6 +52,6 @@ facilitent le développement :
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<!-- références -->
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<!-- références -->
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[1]: /
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[1]: /
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[2]: ./sources/smpr-1re-partie.md
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[2]: ./sources/
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[3]: https://pandoc.org/installing.html
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[3]: https://pandoc.org/installing.html
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[4]: https://gitlab.coko.foundation/pagedjs/pagedjs-cli#installation
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[4]: https://gitlab.coko.foundation/pagedjs/pagedjs-cli#installation
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BIN
modèle.zip
BIN
modèle.zip
Binary file not shown.
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@ -0,0 +1 @@
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Subproject commit 34d59246b2d14b101ac4f787e21e13a42f994723
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---
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title: Recherche et bibliographie
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subtitle: Pubmed et Zotero
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date: 4 février 2026
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place: SMPR-RMS
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id: 20260128155952
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creation_date: 2026-01-28T16:00:10+0100
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author:
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- name: Igor Milhit
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email: Igor.Milhit@unige.ch
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licence:
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- type: CC-BY-SA 4.0
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url: https://creativecommons.org/licenses/by-sa/4.0/
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source: https://git.milhit.ch/igor/strat-smpr.git
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bibliography: references.json
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link-citations: true
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---
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## Plan
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1. Recherche de littérature : \
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méthodologie [#](#methodo).
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1. Références et bibliographie : \
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Vancouver et Zotero [#](#biblio).
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# Recherche de littérature : méthodologie {#methodo}
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---
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## Étapes
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1. Rédiger la [question]{.bunige-color} de recherche.
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1. Identifier les [concepts]{.bunige-color}.
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1. Décliner en [termes alternatifs]{.bunige-color} et
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[synonymes]{.bunige-color}.
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1. Combiner avec des [opérateurs booléens]{.bunige-color}.
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1. Adapter la syntaxe aux bases de données.
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1. Améliorer l'équation.
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---
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## Question de recherche
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- Point **essentiel !**.
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- Modèles (PICO, etc.).
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- Contexte des stratégies ?
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---
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## Identifier les concepts
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Est-ce que des exercices réduisent les troubles moteurs des personnes atteintes
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par la maladie de Parkinson ?
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::: {.fragment}
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- `P :` Maladie de Parkinson.
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- `I :` Exercices.
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- `C :` ~~Pas d'exercice~~.
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- `O :` Réduire les troubles moteurs.
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:::
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---
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## Termes alternatifs et synonymes
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- Recherches préliminaires, lectures d'*abstracts*.
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- Site HETOP (+ aide à la traduction) : \
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<https://www.hetop.eu/hetop>.
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::: {.fragment}
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| Concept 1 | Concept 2 | Concept 3 |
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| ----------------- | ----------------- | -------------- |
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| Parkinson | Exercise | Motor disorder |
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| Parkinsonism | Exercise therapy | Gait apraxia |
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| Parkinson disease | Physical exercice | Gait disorder |
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:::
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---
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## Langage naturel, vocabulaire contrôlé
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🎯 **« Cancer »**
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::: {.bunige-columns}
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::: {.bunige-column .fragment}
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**Langage naturel :**
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- `tumor(s)`.
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- `neoplasm(s)`.
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- `neoplasia(s)`.
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:::
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::: {.bunige-column .fragment}
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**Vocabulaire contrôlé (MeSH) :**
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- [`Neoplasm[Mesh]`]{.bunige-code-inline}.
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:::
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:::
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---
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## MeSH
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- Vocabulaire contrôlé de Medline (Pubmed).
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- 16 catégories (arborescences).
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- Hiérarchisé, du plus général au plus particulier.
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- Supprime les ambiguïtés (python).
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- Regroupe les synonymes (tumor, neoplasm, etc.).
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- Indexation sujet des articles.
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---
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## Termes alternatifs et MeSH
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| Concept 1 | Concept 2 | Concept 3 |
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| --------------------------- | -------------------------- | ------------------------- |
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| Parkinson | Exercise | Motor disorder |
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| Parkinsonism | Exercise therapy | Gait apraxia |
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| Parkinson disease | Physical exercice | Gait disorder |
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| "Parkinson disease"\[Mesh\] | "Exercise therapy\[Mesh\]" | "Motor Disorders"\[Mesh\] |
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---
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## Combiner synonymes et concepts
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::: {.bunige-columns}
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::: {.bunige-column .bunige-no-border .fragment data-fragment-index="1"}
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:::
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::: {.bunige-column .bunige-no-border .fragment data-fragment-index="2"}
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:::
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::: {.bunige-column .bunige-no-border .fragment data-fragment-index="3"}
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:::
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:::
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<small class="fragment" data-fragment-index="3">
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Adapté de Jankiewicz JT. Diagram of three Boolean logic operators.
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"and", "or" and "not". 2022.
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<https://commons.wikimedia.org/wiki/File:Boolean_logic.svg>
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</small>
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---
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## Syntaxe
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- `"Expression exacte"`.
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- Troncature (`*`) : [`analy*`]{.bunige-code-inline} pour analytique,
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analyse, analytic, etc.
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- Filtres de l'interface.
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---
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## Équation finale
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::: {.bunige-text-left-aligned}
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`(Parkinson OR Parkinsonism OR "Parkinson Disease" OR "Parkinson
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Disease"[Mesh]) AND (Exercise OR "Exercise therap*" OR "Physical exercise*" OR
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"Exercise Therapy"[Mesh]) AND ("Motor disorder*" OR "Gait apraxia" OR Gait
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disorder*" OR "Motor Disorders"[Mesh])`
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:::
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---
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## Pistes pour vos stratégies
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- Identifier le ou les MeSH / Emtree du sujet principal.
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- S'en inspirer pour trouver des synonymes.
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- Identifier des « angles » pertinents.
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||||||
|
- Filtre par date de publication !
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Démo Pubmed
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
[unige.ch/biblio/pubmed](https://unige.ch/biblio/pubmed)
|
||||||
|
|
||||||
|
# Références et bibliographie : Vancouver et Zotero {#biblio}
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Rev Med Suisse
|
||||||
|
|
||||||
|
- Style [numérique]{.bunige-color}. Chiffre arabe en exposant.
|
||||||
|
- Style [NLM/Vancouver]{.bunige-color}.
|
||||||
|
- Max 3 auteurs + et al.
|
||||||
|
- Max 15 références, sauf si revue de littérature.
|
||||||
|
- Si possible, 1 ou 2 références en français.
|
||||||
|
|
||||||
|
<small class="bunige-text-left-aligned">
|
||||||
|
Guide Vancouver (2023) \
|
||||||
|
<https://www.unige.ch/biblio/index.php/download_file/22303/>
|
||||||
|
</small>
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Rédaction d'une référence
|
||||||
|
|
||||||
|
1. Identifier le type du document.
|
||||||
|
1. Trouver les informations minimales :
|
||||||
|
- Titre de l'article.
|
||||||
|
- Auteur(s) et autrice(s).
|
||||||
|
- Nom de la publication (titre de la revue).
|
||||||
|
- Volume ; numéro ; date de publication ; pagination.
|
||||||
|
1. Mettre en forme (syntaxe) selon le style de citation.
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Article scientifique
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Auteur-trice, Auteur-trice, Auteur-trice, et al. Titre de l’article. Titre
|
||||||
|
abrégé de la revue. Année de publication;Volume(n°):pages.
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Widmer D, Jotterand S, Ninane F, et al. Multimorbidité et interprofessionnalité
|
||||||
|
en médecine de famille. Rev Med Suisse. 2016;12(518):937‑8.
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Titre abrégé :
|
||||||
|
|
||||||
|
- Catalogue NLM : <https://www.ncbi.nlm.nih.gov/nlmcatalog/journals>.
|
||||||
|
- ISSN Portal : <https://portal.issn.org/>
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Livre
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Auteur-trice. Titre de l’ouvrage : sous-titre. Numéro de l'édition. Ville :
|
||||||
|
Éditeur ; année.
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Rouessac F. Analyse chimique : méthodes et techniques instrumentales.
|
||||||
|
9<sup>e</sup> éd. Malakoff : Dunod ; 2019.
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Chapitre de livre
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Auteur-trice. Titre du chapitre. In : Auteur-trices. Titre du livre. Numéro de
|
||||||
|
l'édition. Ville : Éditeur ; année. p. 1<sup>re</sup> page du chapitre-dernière
|
||||||
|
page du chapitre.
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
::: {.bunige-text-left-aligned}
|
||||||
|
|
||||||
|
Patrick GL. Antiviral agents. In : An introduction to medical chemistry.
|
||||||
|
6<sup>e</sup> éd. Oxford : Oxford University Press ; 2017. p. 490-542.
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Démo Zotero
|
||||||
|
|
||||||
|
::: {.bunige-columns .bunige-columns-center}
|
||||||
|
|
||||||
|
::: {.bunige-column}
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
::: {.bunige-column}
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
:::
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
## Conseils pour la collaboration
|
||||||
|
|
||||||
|
- Bibliothèque de groupe.
|
||||||
|
- Bibliothèque de groupe ≠ votre bibliothèque.
|
||||||
|
- Héritage d'un fichier.
|
||||||
|
- Word, Windows, Mac.
|
||||||
|
- LibreOffice ? Google Docs ? Word 365 en ligne ?
|
||||||
|
|
||||||
|
---
|
||||||
|
|
||||||
|
::: {.r-fit-text .bunige-color}
|
||||||
|
Merci !
|
||||||
|
:::
|
||||||
|
|
||||||
|
|
@ -0,0 +1,81 @@
|
||||||
|
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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|
<svg:svg
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|
height="67.132545mm"
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viewBox="0 0 83.521155 67.132546"
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|
version="1.1"
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|
id="svg5"
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|
sodipodi:docname="boolean-and.svg"
|
||||||
|
inkscape:version="1.4.3 (0d15f75042, 2025-12-25)"
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|
xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
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xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
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|
xmlns:svg="http://www.w3.org/2000/svg">
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|
<sodipodi:namedview
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|
id="namedview1"
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pagecolor="#ffffff"
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bordercolor="#cccccc"
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borderopacity="1"
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inkscape:showpageshadow="0"
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inkscape:pageopacity="1"
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inkscape:pagecheckerboard="0"
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inkscape:deskcolor="#d1d1d1"
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inkscape:document-units="mm"
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inkscape:zoom="2.017683"
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inkscape:cx="18.090057"
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inkscape:window-width="3072"
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inkscape:window-height="1659"
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inkscape:window-x="0"
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|
inkscape:window-y="0"
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inkscape:window-maximized="1"
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inkscape:current-layer="svg5" />
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<svg:defs
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<svg:g
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<svg:circle
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|
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|
<svg:circle
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|
style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:0.264583;stop-color:#000000"
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|
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|
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|
cx="87.332413"
|
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|
cy="123.39319"
|
||||||
|
r="20.775" />
|
||||||
|
<svg:path
|
||||||
|
id="circle4400"
|
||||||
|
style="fill:#d80669;fill-opacity:1;fill-rule:evenodd;stroke:#000000;stroke-width:0.264583;stop-color:#000000"
|
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|
d="m 73.619039,107.80484 a 20.774999,20.774999 0 0 0 -7.061583,15.58819 20.774999,20.774999 0 0 0 7.051765,15.57993 20.774999,20.774999 0 0 0 7.051765,-15.57993 20.774999,20.774999 0 0 0 -7.041947,-15.58819 z" />
|
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|
</svg:g>
|
||||||
|
<svg:g
|
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|
id="g22900"
|
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|
transform="matrix(1.9747106,0,0,1.9747106,-235.81512,-83.501234)">
|
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|
<svg:path
|
||||||
|
d="m 133.96445,42.393957 h -1.19274 l -0.82973,5.185831 h 0.74824 l 0.14076,-0.940858 h 1.00012 l 0.14076,0.940858 h 0.82233 z m -0.63711,0.918633 0.39264,2.622549 h -0.78528 z"
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|
<svg:path
|
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|
id="path21887"
|
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|
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||||||
|
</svg:g>
|
||||||
|
<script />
|
||||||
|
</svg:svg>
|
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|
After Width: | Height: | Size: 4.7 KiB |
|
|
@ -0,0 +1,79 @@
|
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|
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
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|
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|
<svg:svg
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|
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|
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|
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|
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sodipodi:docname="boolean-not.svg"
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|
inkscape:version="1.4.3 (0d15f75042, 2025-12-25)"
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xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
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xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
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|
xmlns:svg="http://www.w3.org/2000/svg">
|
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|
<sodipodi:namedview
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||||||
|
id="namedview1"
|
||||||
|
pagecolor="#ffffff"
|
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|
bordercolor="#cccccc"
|
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|
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|
||||||
|
inkscape:showpageshadow="0"
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|
inkscape:pageopacity="1"
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inkscape:pagecheckerboard="0"
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inkscape:deskcolor="#d1d1d1"
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inkscape:document-units="mm"
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inkscape:zoom="3.211197"
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inkscape:cx="122.85138"
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inkscape:cy="154.14812"
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inkscape:window-width="3072"
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inkscape:window-height="1659"
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|
inkscape:window-x="0"
|
||||||
|
inkscape:window-y="0"
|
||||||
|
inkscape:window-maximized="1"
|
||||||
|
inkscape:current-layer="svg5" />
|
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|
<svg:defs
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|
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|
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|
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|
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<svg:path
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|
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|
<svg:path
|
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|
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Reference in New Issue