spell: add two words in the French dictionary

Co-Authored-by: iGor milhit <igor@milhit.ch>

after/ftplugin/json.lua

@@ -0,0 +1,8 @@
+-- Specific settings for JSON files
+--   Use treesitter for folding
+--   Disable the color column
+
+vim.opt.foldmethod="expr"
+vim.opt.foldexpr="nvim_treesitter#foldexpr()"
+vim.opt.foldlevel=3
+vim.opt.colorcolumn=""

init.lua

@@ -35,6 +35,7 @@ I hope you enjoy your Neovim journey,
 
 P.S. You can delete this when you're done too. It's your config now :)
 --]]
+
 -- Set <space> as the leader key
 -- See `:help mapleader`
 --  NOTE: Must happen before plugins are required (otherwise wrong leader will be used)
@@ -67,11 +68,13 @@ require('lazy').setup({
 
   -- Git related plugins
   'tpope/vim-fugitive',
-  'tpope/vim-rhubarb',
 
   -- Detect tabstop and shiftwidth automatically
   'tpope/vim-sleuth',
 
+  -- Improve surroundings management
+  'tpope/vim-surround',
+
   -- NOTE: This is where your plugins related to LSP can be installed.
   --  The configuration is done below. Search for lspconfig to find it below.
   {
@@ -84,7 +87,7 @@ require('lazy').setup({
 
       -- Useful status updates for LSP
       -- NOTE: `opts = {}` is the same as calling `require('fidget').setup({})`
-      { 'j-hui/fidget.nvim', opts = {} },
+      { 'j-hui/fidget.nvim', tag = "legacy", opts = {} },
 
       -- Additional lua configuration, makes nvim stuff amazing!
       'folke/neodev.nvim',
@@ -93,6 +96,7 @@ require('lazy').setup({
 
   {
     -- Autocompletion
+    --   See Configure nvim-cmp at the end of this file
     'hrsh7th/nvim-cmp',
     dependencies = {
       -- Snippet Engine & its associated nvim-cmp source
@@ -102,6 +106,12 @@ require('lazy').setup({
       -- Adds LSP completion capabilities
       'hrsh7th/cmp-nvim-lsp',
 
+      -- Adds completion capabilities for text in buffers
+      'hrsh7th/cmp-buffer',
+
+      -- Adds path completion capabilities
+      'hrsh7th/cmp-path',
+
       -- Adds a number of user-friendly snippets
       'rafamadriz/friendly-snippets',
     },
@@ -153,7 +163,7 @@ require('lazy').setup({
         icons_enabled = true,
         theme = 'nord',
         component_separators = '|',
-        section_separators = '/',
+        section_separators = '',
       },
     },
   },
@@ -188,6 +198,16 @@ require('lazy').setup({
     end,
   },
 
+  -- Extension to telescope to use Ag (or ripgrep) to filter results
+  {
+    'kelly-lin/telescope-ag'
+  },
+
+  -- Allow to search for snippets
+  {
+    'benfowler/telescope-luasnip.nvim'
+  },
+
   {
     -- Highlight, edit, and navigate code
     'nvim-treesitter/nvim-treesitter',
@@ -220,16 +240,19 @@ vim.opt.rtp:append (vim.fn.stdpath ('data') .. '/site')
 -- NOTE: You can change these options as you wish!
 
 -- Set highlight on search
-vim.o.hlsearch = false
+vim.o.hlsearch = true
+
+-- Preview changes when searching and substituing
+--   nosplit avoid to display the preview in a separate split
+vim.o.inccommand = "nosplit"
 
 -- Make line numbers default
 vim.wo.number = true
 
 -- Set the maximum width of a line
 vim.opt.textwidth = 79
-
+-- Display the cusor column at 79+1 column
--- Set text formatting options
+vim.opt.colorcolumn:append('+1')
--- vim.opt.formatoptions:append('a')
 
 -- Enable mouse mode
 vim.o.mouse = 'a'
@@ -266,6 +289,14 @@ vim.o.termguicolors = true
 -- Set the spelling for English, French and German.
 vim.opt.spelllang = 'en,fr,de'
 
+-- Set the folding level to 1, to allow level 2 headers to be seen.
+vim.opt.foldlevel = 1
+
+-- Set a python virtualenv as python3 provider.
+--   `vim.env.HOME` uses the neovim API to fetch the $HOME env.
+--   The `..` appends strings in lua.
+vim.g.python3_host_prog = vim.env.HOME .. '/.pyenv/versions/neovim3/bin/python'
+
 -- [[ Basic Keymaps ]]
 
 -- Keymaps for better default experience
@@ -302,6 +333,10 @@ require('telescope').setup {
 
 -- Enable telescope fzf native, if installed
 pcall(require('telescope').load_extension, 'fzf')
+-- Enable telescope luasnip extension, if installed
+pcall(require('telescope').load_extension, 'luasnip')
+-- Enable telescope-ag extension, if installed
+pcall(require('telescope').load_extension, 'ag')
 
 -- See `:help telescope.builtin`
 vim.keymap.set('n', '<leader>?', require('telescope.builtin').oldfiles, { desc = '[?] Find recently opened files' })
@@ -320,12 +355,14 @@ vim.keymap.set('n', '<leader>sh', require('telescope.builtin').help_tags, { desc
 vim.keymap.set('n', '<leader>sw', require('telescope.builtin').grep_string, { desc = '[S]earch current [W]ord' })
 vim.keymap.set('n', '<leader>sg', require('telescope.builtin').live_grep, { desc = '[S]earch by [G]rep' })
 vim.keymap.set('n', '<leader>sd', require('telescope.builtin').diagnostics, { desc = '[S]earch [D]iagnostics' })
+vim.keymap.set('n', '<leader>sb', require('telescope.builtin').buffers, { desc = '[S]earch [B]uffers' })
+vim.keymap.set('n', '<leader>ss', require'telescope'.extensions.luasnip.luasnip , { desc = '[S]earch [S]nippets' })
 
 -- [[ Configure Treesitter ]]
 -- See `:help nvim-treesitter`
 require('nvim-treesitter.configs').setup {
   -- Add languages to be installed here that you want installed for treesitter
-  ensure_installed = { 'c', 'cpp', 'go', 'lua', 'python', 'rust', 'tsx', 'typescript', 'vimdoc', 'vim' },
+  ensure_installed = { 'c', 'cpp', 'go', 'lua', 'python', 'rust', 'tsx', 'typescript', 'vimdoc', 'vim', 'json' },
 
   -- Autoinstall languages that are not installed. Defaults to false (but you can change for yourself!)
   auto_install = false,
@@ -450,12 +487,40 @@ local servers = {
   -- rust_analyzer = {},
   -- tsserver = {},
 
+  marksman = {
+    ft = {
+      'markdown',
+      'pandoc'
+    }
+  },
+
   lua_ls = {
     Lua = {
       workspace = { checkThirdParty = false },
       telemetry = { enable = false },
     },
   },
+
+  texlab = {
+    settings = {
+      build = {
+        executable = "tectonic",
+        args = {
+          "-X",
+          "compile",
+          "%f",
+          "--syntex",
+          "--keep-logs",
+          "--keep-intermediates"
+        }
+      }
+    }
+  },
+
+  -- Require vscode-langservers-extracted
+  --   https://github.com/hrsh7th/vscode-langservers-extracted
+  jsonls = {
+  },
 }
 
 -- Setup neovim lua configuration
@@ -482,12 +547,26 @@ mason_lspconfig.setup_handlers {
   end,
 }
 
--- [[ Configure nvim-cmp ]]
+-- [[ Configure nvim-cmp, and LuaSnip ]]
 -- See `:help cmp`
 local cmp = require 'cmp'
 local luasnip = require 'luasnip'
 require('luasnip.loaders.from_vscode').lazy_load()
-luasnip.config.setup {}
+luasnip.config.setup {
+  -- Extend markdown snippets to pandoc filetype
+  --   https://github.com/L3MON4D3/LuaSnip/issues/132#issuecomment-1101710309
+  snippets = {
+    markdown = {},
+  },
+  luasnip.filetype_extend("pandoc", {"markdown"}),
+}
+
+-- Load snippets from ~/.config/nvim/LuaSnip/
+require("luasnip.loaders.from_lua").load({paths = "~/.config/nvim/my_snippets/"})
+
+-- Keymap to reload snippets
+--   https://www.ejmastnak.com/tutorials/vim-latex/luasnip/#refreshing-snippets-from-a-separate-vim-instance
+vim.keymap.set('n', '<Leader>L', '<Cmd>lua require("luasnip.loaders.from_lua").load({paths = "~/.config/nvim/my_snippets/"})<CR>', { desc = 'Reload [L]uaSnippets' })
 
 cmp.setup {
   snippet = {
@@ -526,7 +605,15 @@ cmp.setup {
   },
   sources = {
     { name = 'nvim_lsp' },
+    {
+      name = 'buffer',
+      option = {
+        keyword_length = 4,
+        keyword_pattern = [[\k\+]],
+      },
+    },
     { name = 'luasnip' },
+    { name = 'path' },
   },
 }
 

lua/custom/plugins/autopairs.lua

@@ -0,0 +1,17 @@
+-- File: lua/custom/plugins/autopairs.lua
+
+return {
+  "windwp/nvim-autopairs",
+  -- Optional dependency
+  dependencies = { 'hrsh7th/nvim-cmp' },
+  config = function()
+    require("nvim-autopairs").setup {}
+    -- If you want to automatically add `(` after selecting a function or method
+    local cmp_autopairs = require('nvim-autopairs.completion.cmp')
+    local cmp = require('cmp')
+    cmp.event:on(
+      'confirm_done',
+      cmp_autopairs.on_confirm_done()
+    )
+  end,
+}

lua/custom/plugins/grammalecte.lua

@@ -0,0 +1,14 @@
+-- Plugin to get Grammalecte checks in (neo)vim.
+
+-- Set the path to the grammalecte-cli executable
+vim.cmd([[ let g:grammalecte_cli_py = "/usr/bin/grammalecte-cli" ]])
+
+return {
+  "dpelle/vim-Grammalecte",
+  ft = {
+    "pandoc",
+    "markdown",
+    "text",
+    "gitcommit"
+  }
+}

lua/custom/plugins/markdownpreview.lua

@@ -1,14 +1,14 @@
 -- makdown-preview.nvim
 -- installed with code found at https://github.com/iamcco/markdown-preview.nvim/issues/558#issuecomment-1514701537
 
--- Force the light theme, no matter the system option is.
-vim.cmd([[ let g:mkdp_theme = 'light' ]])
-
 return {
   {
     "iamcco/markdown-preview.nvim",
-    ft = "pandoc",
+    ft = {
+      'pandoc',
+      'markdown'
+    },
     lazy = true,
-    build = "cd app && yarn install",
+    build = "cd app && npm install && git reset --hard",
   },
 }

lua/custom/plugins/mkdnflow.lua

@@ -9,11 +9,48 @@ vim.keymap.set({'n','x','v'}, '<leader>tf', '<cmd>MkdnTableFormat<CR>', {desc =
 return {
   {
     "jakewvincent/mkdnflow.nvim",
-    ft = 'pandoc',
+    ft = {
+      'pandoc',
+      'markdown'
+    },
     lazy = true,
     config = function ()
       require('mkdnflow').setup({
-    })
+        filetypes = {
+          md = true,
+          rmd = true,
+          markdown = true,
+          pandoc = true
+        },
+        perspective = {
+          -- Ensure that paths are relative to the current file
+          priority = "current"
+        },
+        links = {
+          conceal = true,
+        },
+        new_file_template = {
+          use_template = true,
+          template = [[
+---
+title:
+date: {{ date }}
+id: {{ id }}
+tags: []
+---
+]],
+          placeholders = {
+            before = {
+              date = function ()
+                return os.date("%Y-%m-%dT%H:%M:%S%z")
+              end,
+              id = function ()
+                return os.date("%Y%m%d%H%M%S")
+              end
+            },
+          }
+        }
+      })
     end
   }
 }

lua/custom/plugins/neo-tree.lua

@@ -1,4 +1,5 @@
--- Trying to add a custom plugin for file tree
+-- Plugin for file tree: neo-tree
+--   Using the kickstart and the neo-tree documentations
 
 -- Unless you are still migrating, remove the deprecated commands from v1.x
 vim.cmd([[ let g:neo_tree_remove_legacy_commands = 1 ]])

lua/custom/plugins/rainbow-csv.lua

@@ -0,0 +1,21 @@
+-- In order to manage CSV files
+
+return {
+    'cameron-wags/rainbow_csv.nvim',
+    config = true,
+    ft = {
+        'csv',
+        'tsv',
+        'csv_semicolon',
+        'csv_whitespace',
+        'csv_pipe',
+        'rfc_csv',
+        'rfc_semicolon'
+    },
+    cmd = {
+        'RainbowDelim',
+        'RainbowDelimSimple',
+        'RainbowDelimQuoted',
+        'RainbowMultiDelim'
+    }
+}

lua/custom/plugins/toggleterm.lua

@@ -0,0 +1,16 @@
+-- A neovim lua plugin to help easily manage multiple terminal windows
+--   https://github.com/akinsho/toggleterm.nvim
+
+-- Set ZSH as shell to get it in a terminal buffer
+vim.opt.shell = "/usr/bin/zsh"
+
+return {
+  {
+    'akinsho/toggleterm.nvim',
+    version = "*",
+    opts = {
+      -- Avoid terminal to be darker than the Nord colorscheme
+      shade_terminals = false
+    }
+  }
+}

lua/custom/plugins/true-zen.lua

@@ -0,0 +1,35 @@
+local api = vim.api
+
+api.nvim_set_keymap("n", "<leader>zn", ":TZNarrow<CR>", {})
+api.nvim_set_keymap("v", "<leader>zn", ":'<,'>TZNarrow<CR>", {})
+api.nvim_set_keymap("n", "<leader>zf", ":TZFocus<CR>", {})
+api.nvim_set_keymap("n", "<leader>zm", ":TZMinimalist<CR>", {})
+api.nvim_set_keymap("n", "<leader>za", ":TZAtaraxis<CR>", {})
+
+return {
+  "Pocco81/true-zen.nvim",
+  -- Twilight allows to dim text outside of the cursor line.
+  dependencies = {
+    "folke/twilight.nvim",
+    opts = {
+      -- Set the context to null in order to avoid highlighting to much
+      -- paragraphs in markdown.
+      context = 0,
+    },
+  },
+  config = function ()
+    require('true-zen').setup({
+      modes = {
+        ataraxis = {
+          minimum_writing_area = {
+            width = 100
+          }
+        }
+      },
+      integrations = {
+        twilight = true,
+        lualine = true
+    }
+  })
+  end
+}

lua/custom/plugins/zen-mode.lua

@@ -0,0 +1,39 @@
+--  Zen mode with twilight.
+--    Improves the edition experience with distraction free feature.
+
+return {
+  "folke/zen-mode.nvim",
+  ft = {
+    "markdown",
+    "pandoc"
+  },
+  -- Twilight allows to dim text outside of the cursor line.
+  dependencies = {
+    "folke/twilight.nvim",
+    opts = {
+      -- Set the context to null in order to avoid highlighting to much
+      -- paragraphs in markdown.
+      context = 0,
+    },
+  },
+  opts = {
+    window = {
+      -- Set the window width (85 columns) and height (80%).
+      width = 85,
+      height = .8,
+      options = {
+        -- Disable line numbering, signcolumn and colorcolumn.
+        number = false,
+        signcolumn = "no",
+      },
+    },
+    plugins = {
+      options = {
+        enabled = true,
+        ruler = false,
+        showcmd = false,
+      },
+      gitsigns = { enabled = false },
+    },
+  },
+}

my_snippets/gitcommit.lua

@@ -0,0 +1,48 @@
+local ls = require("luasnip")
+local s = ls.snippet
+local t = ls.text_node
+local f = ls.function_node
+local fmt = require("luasnip.extras.fmt").fmt
+
+-- Function to get the current date
+local get_date = function()
+  return os.date("%Y-%m-%d")
+end
+
+return {
+  s(
+    {
+      trig = "hr",
+      name = "Heures",
+      dscr = "Insert a commit message for saving the worked hours."
+    },
+    {
+      t("organisation: enregistre les heures")
+    }
+  ),
+  s(
+    {
+      trig = "ic",
+      name = "Incremental note commit message",
+      dscr = "Insert a commit message for my incremental notes commits."
+    },
+    fmt(
+      [[
+      Incrémente la note du {1}
+      ]],
+      {
+        f(get_date, {})
+      }
+    )
+  ),
+  s(
+    {
+      trig = "aou",
+      name = "AoU stats commit message",
+      dscr = "Commit message for an increment of AoU validation statistics."
+    },
+    {
+      t("r+e: incrémente les stats de validation de l'AoU")
+    }
+  )
+}

my_snippets/html.lua

@@ -0,0 +1,111 @@
+-- My HTML snippets
+--   Below, the duplicate of brackets, for instance in the CSS code, is for
+--   escaping delimiters.
+
+-- Set the local variables (shortcuts)
+local ls = require("luasnip")
+local s = ls.snippet
+local i = ls.insert_node
+local fmt = require("luasnip.extras.fmt").fmt
+
+return {
+  -- A main snippet setting the outer structure, with the style tag.
+  --   Should be completed with the nested article item below.
+  s(
+    {
+      trig = "mcim",
+      name = "Main article structure for MC portal",
+      dscr = "Insert an HTML structure to add bibliographic description on the clinical medicine portal."
+    },
+    fmt(
+      [[
+        <article class="mc-{1}-main">
+          {2}  
+          <style>
+            .mc-{1}-item > ul > li {{
+              padding: 0 !important;
+            }}
+            .mc-{1}-item li:not([class])::before,
+            .mc-{1}-item li::before {{
+            content: none;
+            }}
+          </style>
+        </article>
+      ]],
+      {
+        i(1, "Class identifier"),
+        i(0)
+      },
+      {
+        repeat_duplicates = true
+      }
+    )
+  ),
+  -- Snippet that inserts an article with bibliographic metatada, to be nested
+  -- in the upper main structure.
+  s(
+    {
+      trig = "mcii",
+      name = "Item article structure for MC portal",
+      dscr = "Insert an HTML structure to add an item bibliographic description on the clinical medicine portal."
+    },
+    fmt(
+      [[
+          <article class="mc-{1}-item">
+            <ul>
+              <li>Dorland W. Dorland’s illustrated medical dictionary. 4th ed.</li>
+              <li>Philadelphia: Elsevier, 2020.</li>
+              <li>Cote : W 13 ed 4</li>
+              <li>
+                <a lang="fr"
+                   dir="ltr"
+                   type="html/text"
+                   href="https://slsp-unige.primo.exlibrisgroup.com/articleermalink/41SLSP_UGE/l0hvjc/alma991008098789705502"
+                   hreflang="français"
+                   rel="nofollow"
+                   target="_blank">
+                  Le document dans le catalogue Swisscovery
+                </a>.
+              </li>
+            </ul>
+            <span placeholder="coins metadata"></span>
+          </article>{2}
+      ]],
+      {
+        i(1, "Class identifier"),
+        i(0)
+      },
+      {
+        repeat_duplicates = true
+      }
+    )
+  ),
+  -- Snippet that insert a list item with a link to an ebook online.
+  s(
+    {
+      trig = "eli",
+      name = "List item for an ebook link",
+      dscr = "Insert a link for an ebook nested in a list item. Designed for the medicine portal HTML structure."
+    },
+    fmt(
+      [[
+      <li>
+        <a dir="ltr"
+           type="html/text"
+           href="{1}"
+           lang="{2}"
+           hreflang="{3}"
+           ref="nofollow"
+           target="_blank">
+          Livre électronique en ligne
+        </a>.
+      </li>
+      ]],
+      {
+        i(1, "Ebook URL"),
+        i(2, "Language code (2 chars)"),
+        i(3, "Language name")
+      }
+    )
+  )
+}

my_snippets/markdown.lua

@@ -0,0 +1,172 @@
+local ls = require("luasnip")
+local s = ls.snippet
+local t = ls.text_node
+local i = ls.insert_node
+local f = ls.function_node
+local fmt = require("luasnip.extras.fmt").fmt
+
+-- Function to get the datetime
+--   with daylight saving time
+--   according to the locale
+local get_datetime = function()
+  return os.date("%Y-%m-%dT%H:%M:%S%z")
+end
+
+-- Function to get the current date
+local get_date = function()
+  return os.date("%Y-%m-%d")
+end
+
+-- Function to get the current month 
+local get_month = function()
+  return os.date("%B")
+end
+
+-- Function to get the current year
+local get_month_year = function()
+  return os.date("%B-%Y")
+end
+
+-- Function to get an id based on the datetime 
+local get_id = function()
+  return os.date("%Y%m%d%H%M%S")
+end
+
+-- Function to get the number of the current day 
+local get_day = function()
+  return os.date("%d")
+end
+
+return {
+  s(
+    {
+      trig = "dt",
+      name = "Datetime",
+      dscr = "Insert the current datetime with locale daylight saving."
+    },
+    {
+      f(get_datetime, {})
+    }
+  ),
+  s(
+    {
+      trig = "id",
+      Name = "ID",
+      dscr = "Insert an id based on the current datetime."
+    },
+    {
+      f(get_id, {})
+    }
+  ),
+  s(
+    {
+      trig = "today",
+      Name = "Today",
+      dscr = "Insert the number of the current day."
+    },
+    {
+      f(get_day, {})
+    }
+  ),
+  s(
+    {
+      trig = "ie",
+      Name = "Inc entry",
+      dscr = "Insert an Inc entry for today (heading level 2)."
+    },
+    fmt(
+      [[
+      ## {}
+
+
+      ]],
+      {
+        f(get_day, {})
+      }
+    )
+  ),
+  s(
+    {
+      trig = "fm",
+      name = "YAML frontmatter",
+      dscr = "Insert a YAML frontmatter for markdown files.\n\nIt has a datetime with the locale daylight saving time, and an ID based on the datetime.\nTab to jump to next text input."
+    },
+    fmt(
+      [[
+      ---
+      title: {1}
+      date: {3}
+      id: {4}
+      tags: [{2}]
+      ---
+
+      ]],
+      {
+        i(1, "title"),
+        i(2, "tags"),
+        f(get_datetime, {}),
+        f(get_id, {})
+      }
+    )
+  ),
+  s(
+    {
+      trig = "inc",
+      name = "INC YAML frontmatter",
+      dscr = "Insert a YAML frontmatter for INC notes.\n\nIt has a datetime with the locale daylight saving time, prefilled title, author, categories and tags.\nAdjust the title manually."
+    },
+    fmt(
+      [[
+        ---
+        title: {1}
+        date: {2}
+        id: {4}
+        tags: [notes, quotidien, {3}]
+        ---
+
+      ]],
+      {
+        f(get_month_year, {}),
+        f(get_datetime, {}),
+        f(get_month, {}),
+        f(get_id, {})
+      }
+    )
+  ),
+  s(
+    {
+      trig="reflink",
+      name = "Reference link",
+      dscr="Insert a link with reference syntax",
+      docstring = "[Link text][Reference]\n\n[Reference]: Link Target \"Title\"\n\nTab to jump to next text input. \"Reference\" is automatically repeated."
+    },
+    fmt(
+      [[
+        [{1}][{2}]
+
+        [{2}]: {3}
+      ]],
+      {
+        i(1, "Link text"),
+        i(2, "Reference"),
+        i(3, "Link target")
+      },
+      { repeat_duplicates = true }
+    )
+  ),
+  s(
+    {
+      trig = "tags",
+      name = "Tags",
+      dscr = "Insert a one-line tags array, in a text file (markdown)."
+    },
+    fmt(
+      [[
+      tags: [{}]
+      ]],
+      {
+        i(1, "tags")
+      }
+    )
+  )
+}

spell/en.utf-8.add

@@ -0,0 +1,15 @@
+AoU
+Floriane
+Séverine
+HEG
+neovim
+lua
+InfoBiblio
+Réaménagement
+biodiversité
+hyperindustrialisés
+lacto-fermentation
+d'engrain
+écorcheuse
+écopolitique
+Centralité